高原湖泊沉积物中反硝化微生物的群落特征——以包头南海湖为例

为了探明内蒙古高原富营养化城市湖泊中nirS型反硝化细菌群落结构的特异性,利用特异性功能基因nirS对包头市南海湖的表层沉积物进行反硝化细菌多样性测定,在分析各采样点沉积物理化指标的基础上,对各样品中nirS型反硝化细菌群落和多样性进行研究.结果表明,南海湖沉积物Shannon指数变化为3.07~3.41,相比于其他研究,反硝化微生物多样性相对较低.参与反硝化的优势菌属与大多数湖泊保持一致,以假单胞菌属（Pseudomonas）和红杆菌属（Rhodobacter）为主.冗余分析（RDA）指出,城市湖泊中的各种类型的污染物对反硝化优势菌属有明显的促进作用,红杆菌属（Rhodobacter）与硝酸盐氮、亚硝酸盐氮呈正相关,假单胞菌属（Pseudomonas）除受硝酸盐氮、亚硝酸盐氮的影响外,还与总磷呈较强的正相关.南海湖nirS型反硝化细菌中的主要菌属促进了反硝化作用,加速了南海湖氮素的去除.     

不同基质生物炭对厌氧处理餐厨垃圾效能及微生态的影响

探究了剩余污泥（SS）、餐厨垃圾（FW）、玉米芯（CC）、甘蔗渣（BG）4种不同基质生物炭对厌氧生物处理餐厨垃圾效能的影响,对厌氧污泥的关键酶活性、微生物群落分布以及代谢途径等微生态进行了分析.结果表明,厌氧反应器分别加入4种生物炭后,COD平均去除率分别提高了29.49%、23.16%、29.42%、40.32%;傅里叶红外分析表明,投加SS生物炭组出水中羟基、酰胺基以及C-O-C伸缩振动峰减弱.4个厌氧反应器中厌氧污泥的乙酸激酶活性分别为0.40,0.42,0.96,0.98 μmol/g,表明投加CC与BG生物炭促进了餐厨垃圾的厌氧水解酸化过程;厌氧污泥胞外聚合物的蛋白质/多糖之比分别为0.415、0.56、1.89、2.8,投加CC、BG生物炭提高了污泥的稳定性.4个厌氧反应器中拟杆菌门、变形菌门、厚壁菌门为主要菌群,投加BG生物炭促进了变形菌门与厚壁菌门的生长;对于古细菌而言,甲烷杆菌属与甲烷丝菌属为优势种群,SS组的甲烷杆菌属丰度最高（53.48%）,而BG组中甲烷丝菌属丰度最高（42.72%）.KEGG功能分析表明古菌及细菌均以碳水化合物代谢、氨基酸代谢为主;而投加BG与SS生物炭后,微生物膜运输水平得到了提高.     

响应土壤阴离子类型的盐碱土古细菌群落多样性研究

为初步解析我国黑龙江苏打盐碱地（HA）、新疆荒漠盐碱地（XD）、山西平原盐碱地（SY）、江苏滨海盐碱地（JD）和天津滨海盐碱地（TB）5个地区的土壤古细菌群落结构多样性,以及其响应土壤不同阴离子类型的分布特征,采用基于Illumin-Hiseq平台的高通量测序技术获得489~604个古细菌可操纵分类单元（OTU）.OTU多样性分析结果表明XD的古细菌群落物种丰富度最高,SY和HA分别具有最高和最低的古细菌群落多样性和均匀度;OTU的物种注释结果表明HA以奇古菌门（Thaumarchaeota）为优势菌门,其他土壤均以广古菌（Euryarchaeota）为优势;综合5个样品古细菌群落结构、优势古细菌属和土壤阴离子进行的典范对应分析（CCA）结果显示,XD古细菌群落结构和Haloterrigena属（XD中最优势,相对丰度20.2%）明显的响应土壤SO₄^2-浓度;HA古细菌群落结构和Nitrososphaera属（HA中最优势,62.3%）明显的响应土壤HCO₃^-/CO₃^2-浓度和pH;JD、SY和TB古细菌群落结构、Halorubrum属（JD和TB中最优势,24.4%和15.6%）,和Natronomonas属（SY和JD中第二优势,8.1%和9.2%）明显的响应土壤Cl^-浓度.研究结果说明我国不同地域分布的盐碱土受其土壤阴离子类型及其浓度的影响,呈现不同的古细菌群落结构和分布特征.研究结果为我国不同类型盐碱土古细菌资源的挖掘提供依据,也为揭示我国不同类型盐碱土古细菌群落的生态功能提供参考.     

构树修复对重金属污染土壤环境质量的影响

通过温室盆栽试验,研究构树（Broussonetia papyrifera）生长对重金属污染土壤酶活性和微生物群落结构的影响.结果表明,构树修复污染土壤中酶活性和微生物多样性明显提高.经270d培养后,构树生长土壤中蔗糖酶和酸性磷酸酶活性与种植土壤相比分别显著（P<0.05）提高3.12倍和2.29倍;土壤脱氢酶与有效态As、Cd、Pb、Zn和Cu含量,蔗糖酶与有效态Cd含量,以及磷酸酶与有效态Cd和Cu含量之间呈显著负相关（P<0.05）.根据16S和18S rDNA PCR-DGGE分析表明,构树修复可提高污染土壤中细菌和丛枝菌根真菌多样性.上述结果表明,构树修复可有效改善重金属污染土壤的环境质量.然而,污染土壤中重金属有效态含量下降不明显,必须辅助物理和化学措施来强化构树对重金属污染土壤的生态修复潜力.     

Investigating the bacterial community and amoebae population in rural domestic wastewater reclamation for irrigation

Reclamation of domestic wastewater for agricultural irrigation is viewed as a sustainable option to create an alternative water source and address water scarcity. Free-living amoebae(FLA), which are amphizoic protozoa, are widely distributed in various environmental sources. The FLA could cause considerable environmental and health risks. However, little information is available on the risk of these protozoa. In this study, we evaluated the feasibility using rural domestic wastewater for agricultural irrigation, and analyzed dynamic changes of the microbial community structure and FLA populations in raw and treated wastewater, as well as the phyllosphere and rhizosphere of lettuce production sites that were irrigated with different water sources. The bacterial community dynamics were analyzed by terminal restriction fragment length polymorphism(T-RFLP). The bacterial community structures in the influent were similar to that in the effluent, while in some cases relative abundances varied significantly. The populations of Acanthamoeba spp. and Hartmannella vermiformis in the anaerobically treated wastewater were significantly higher than in the raw wastewater. The vegetables could harbor diverse amoebae, and the abundances of Acanthamoeba spp. and H. vermiformis in the rhizosphere were significantly higher than in the phyllosphere. Accordingly, our studies show insight into the distribution and dissemination of amoebae in wastewater treatment and irrigation practices.     

水稻土中五氯酚的降解转化动态及其对微生物群落的影响

采用室内培养实验,研究厌氧条件下水稻土中五氯酚(Pentachlorophenol,PCP)的还原转化与微生物群落组成变化。结果表明,室内培养实验条件下,PCP在水稻土样品中降解比较迅速,在反应17 d时,实验添加的PCP能够完全被还原转化。高通量测序结果显示PCP的添加明显改变了水稻土壤的微生物群落结构,其微生物多样性显著下降,在PCP降解完之后逐渐恢复。原始土壤以及添加PCP的土壤样品中其优势微生物主要分布在变形菌门(Proteobacteria)。PCP添加刺激了水稻土中伯克氏菌科(Burkholderiaceae)、丛毛单胞菌科(Comamonadaceae)、地杆菌科(Geobacteraceae)、红环菌科(Rhodocyclaceae)和假单胞菌科(Pseudomonadaceae)等脱氯相关的微生物菌群繁殖,成为PCP降解过程中的优势菌群,有利于PCP还原降解。本研究结果可为水稻土中有机氯农药污染物的微生物降解脱毒提供理论依据。     

Microbiological characteristics in a zero-valent iron reactive barrier

Zero-valent iron (Fe⁰)-based permeable reactive barriertreatment has been generating great interest for passivegroundwater remediation, yet few studies have paid particularattention to the microbial activity and characteristics withinand in the vicinity of the Fe⁰-barrier matrix. The presentstudy was undertaken to evaluate the microbial population andcommunity composition in the reducing zone of influence byFe⁰ corrosion in the barrier at the Oak Ridge Y-12 Plantsite. Both phospholipid fatty acids and DNA analyses were usedto determine the total microbial population and microbialfunctional groups, including sulfate-reducing bacteria,denitrifying bacteria, and methanogens, in groundwater andsoil/iron core samples. A diverse microbial community wasidentified in the strongly reducing Fe⁰ environment despitea relatively high pH condition within the Fe⁰ barrier (up topH 10). In comparison with those found in the backgroundsoil/groundwater samples, the enhanced microbial populationranged from 1 to 3 orders of magnitude and appeared to increase from upgradient of the barrier to downgradient soil. Inaddition, microbial community composition appeared to change overtime, and the bacterial types of microorganismsincreased consistently as the barrier aged. DNA analysisindicated the presence of sulfate-reducing and denitrifyingbacteria in the barrier and its surrounding soil. However, theactivity of methanogens was found to be relatively low,presumably as a result of the competition by sulfate/metal-reducing bacteria and denitrifying bacteria because of the unlimited availability of sulfate and nitrate in the site groundwater. Results of this study provide evidenceof a diverse microbial population within and in the vicinity ofthe iron barrier, although the important roles of microbial activity, either beneficially or detrimentally, on the longevityand enduring efficiency of the Fe⁰ barriers are yet to be evaluated.     

Selecting Socio-Economic Metrics for Watershed Management

The selection of social and economic metrics to document baseline conditions and analyze the dynamic relationships between ecosystems and human communities are important decisions for scientists, managers, and watershed citizens. A large variety of social and economic data is available but these have limited use without theoretical frameworks. In this paper, several frameworks for reviewing social-ecosystem relations are offered, namely social sanctions, sense of place, civic structure, and cultural differences. Underlying all of these frameworks are attitudes, beliefs, values, and norms that affect which questions are asked and which indicators are chosen. Much work and significant challenges remain in developing a standard set of spatially based socio-economic metrics for watershed management.     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

乙酸型顶极群落的内平衡与反馈调节机制研究

通过产酸脱硫反应器处理高浓度硫酸盐有机废水的连续流试验，从“动态”角度考察COD／SO4^2-比改变引起的pH值、氧化还原电位（ORP）、碱度（ALK）和末端产物（VFAs）等的变动及生态因子的叠加效应引发的优势种群变迁，分析了乙酸型顶极群落的稳定性及其发生定向性生态演替的规律，进而阐明了乙酸型顶极群落抵抗环境压力的内平衡与反馈调节机制，并指出乙酸型代谢和乙酸型顶极群落是产酸脱硫生态系统的典型特征。